Configuration¶
Controlled Vocabulary Terms¶
This module currently expects the following controlled vocabulary terms already exist in chado:
| Purpose | Term Name | Controlled Vocabulary |
|---|---|---|
| Sample type | genomic_DNA | sequence |
| Sample => germplasm relationship | is_extracted_from | stock_relationship |
| Marker => variant relationship | is_marker_of | stock_relationship |
| Marker type | Indicated by user | sequence |
| Variant type | Indicated by user | sequence |
| Property type for free-text marker description | marker_type | feature_property |
You can configure these terms through a settings form under module configuration. In the future, you will also be able to configure the controlled vocabularies for these terms as well.
Database Write Options¶
There is configuration to specify whether you wan the loader to insert only, update only or update/insert as needed.